Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1105
ChIP-seq
Assay category
1365
Transcription
1105
DNA binding
334
DNA accessibility
38
DNA methylation
20
3D chromatin structure
Target of assay
740
histone modification
739
histone
379
narrow histone mark
359
broad histone mark
222
control
143
transcription factor
39
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
Date released
243
August, 2017
195
October, 2019
115
May, 2019
91
December, 2017
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
43
May, 2021
40
May, 2024
24
February, 2018
21
August, 2021
15
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
2
March, 2020
Available data
868
bam
730
bigWig
705
bed narrowPeak
391
bigBed narrowPeak
340
fastq
278
tagAlign
47
bed bed3+
35
bed broadPeak
1
tagAlign bed3+
Organism
1098
Homo sapiens
Biosample type
907
tissue
484
cell line
279
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
209
brain
170
liver
141
connective tissue
123
heart
120
pancreas
73
adipose tissue
73
blood vessel
73
vasculature
66
limb
35
nerve
29
musculature of body
28
artery
27
kidney
22
embryo
22
epithelium
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
1103
AMP
2
T1D
Genome assembly (visualization)
710
GRCh38
648
hg19
Lab
1028
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
37
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
9
inconsistent ontology term
Audit category:
32
missing controlled_by
Audit category:
23
inconsistent control read length
1
inconsistent assembly
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
1105 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
tissue
liver
145
islet of Langerhans
71
left cardiac atrium
40
subcutaneous abdominal adipose tissue
36
body of pancreas
35
+ See 103 more…
in vitro differentiated cells
adipocyte
67
embryonic stem cell
40
neural progenitor cell
21
pancreatic endoderm
18
hepatocyte
15
+ See 8 more…
See all biosamples
Download