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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
686
ChIP-seq
Assay category
686
DNA binding
355
Transcription
106
DNA accessibility
17
DNA methylation
7
3D chromatin structure
1
DNA sequencing
Target of assay
355
transcription factor
200
histone modification
199
histone
128
control
100
narrow histone mark
99
broad histone mark
82
recombinant protein
69
RNA binding protein
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
57
April, 2019
50
May, 2020
49
November, 2018
48
August, 2017
40
May, 2024
22
August, 2021
21
May, 2019
10
October, 2019
6
February, 2021
5
June, 2019
Available data
603
bam
546
bigWig
527
bed narrowPeak
452
fastq
416
bigBed narrowPeak
92
tagAlign
58
bed broadPeak
58
bigBed broadPeak
6
bed bed3+
3
tar
Organism
686
Homo sapiens
Biosample type
384
cell line
278
tissue
15
in vitro differentiated cells
9
primary cell
Organ
552
liver
218
brain
218
pancreas
153
connective tissue
134
heart
129
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
0
esophagus
Project
686
AMP
Genome assembly (visualization)
503
hg19
473
GRCh38
Lab
628
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
18
Bing Ren, UCSD
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_title!
small RNA-seq
BIOSAMPLE
ASSAY
686 results
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ChIP-seq
cell line
HepG2
378
smooth muscle cell of the coronary artery
6
tissue
liver
145
left cardiac atrium
40
heart left ventricle
35
heart
14
heart right ventricle
13
+ See 4 more…
in vitro differentiated cells
hepatocyte
15
primary cell
cardiac fibroblast
5
hepatocyte
4
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