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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
Assay category
57
DNA binding
Target of assay
35
transcription factor
22
histone
22
histone modification
14
narrow histone mark
8
broad histone mark
6
chromatin remodeller
3
RNA binding protein
1
recombinant protein
Date released
39
August, 2017
September, 2018
10
November, 2017
4
October, 2017
3
November, 2018
1
December, 2017
Available data
57
fastq
56
bam
54
bigWig
16
bed narrowPeak
15
bigBed narrowPeak
14
bed bed3+
4
tagAlign
2
bed broadPeak
Organism
57
Homo sapiens
Biosample type
26
tissue
13
cell line
12
primary cell
6
in vitro differentiated cells
Organ
22
pancreas
17
connective tissue
13
liver
12
adipose tissue
4
brain
1
embryo
Project
57
AMP
Genome assembly (visualization)
54
hg19
47
GRCh38
Lab
57
AMP-T2D consortium
Audit category:
57
missing controlled_by
Audit category:
6
inconsistent control run_type
5
inconsistent control read length
assay_title!
whole genome sequencing assay
month_released!
April, 2018
September, 2018
BIOSAMPLE
ASSAY
57 results
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ChIP-seq
tissue
white adipose tissue
12
islet of Langerhans
10
brain
4
cell line
HepG2
13
primary cell
pancreatic endocrine cell
12
in vitro differentiated cells
adipocyte
5
pancreatic endoderm
1
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