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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
Assay category
114
DNA binding
19
DNA accessibility
11
Transcription
3
3D chromatin structure
1
DNA sequencing
Target of assay
71
control
40
transcription factor
6
RNA binding protein
3
histone
3
histone modification
2
chromatin remodeller
2
narrow histone mark
1
broad histone mark
1
recombinant protein
Date released
84
November, 2017
18
August, 2021
October, 2019
4
November, 2018
3
February, 2021
3
January, 2019
2
November, 2019
Available data
109
bam
105
fastq
65
bigWig
46
bed narrowPeak
32
bigBed narrowPeak
bed broadPeak
14
bigBed broadPeak
6
tagAlign
3
tar
Organism
114
Homo sapiens
Biosample type
248
tissue
114
cell line
78
in vitro differentiated cells
63
primary cell
Organ
103
liver
6
blood
6
bodily fluid
2
artery
2
blood vessel
2
epithelium
2
heart
2
pancreas
2
vasculature
Project
114
AMP
Genome assembly (visualization)
336
hg19
GRCh38
Lab
96
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
8
missing controlled_by
Audit category:
2
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
files.file_type!
bed broadPeak
month_released!
October, 2019
BIOSAMPLE
ASSAY
114 results
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ChIP-seq
cell line
HepG2
103
GM12878
6
EndoC_BH1
2
smooth muscle cell of the coronary artery
2
iPSC derived cell line
1
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