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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
ChIP-seq
Assay category
204
Transcription
184
DNA binding
52
DNA accessibility
1
3D chromatin structure
Target of assay
179
histone
179
histone modification
91
narrow histone mark
88
broad histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
84
May, 2021
39
August, 2017
32
September, 2018
June, 2019
16
October, 2019
6
November, 2017
4
May, 2019
3
August, 2021
Available data
184
bam
184
bigWig
172
bed narrowPeak
98
tagAlign
77
fastq
33
bigBed narrowPeak
18
bed broadPeak
18
bigBed broadPeak
3
bed bed3+
Organism
184
Homo sapiens
Biosample type
590
tissue
346
cell line
184
primary cell
120
in vitro differentiated cells
3
stem cell
Organ
62
epithelium
58
pancreas
14
vasculature
12
blood vessel
10
kidney
10
vein
6
brain
3
liver
Project
100
AMP
84
T1D
Genome assembly (visualization)
224
hg19
184
GRCh38
Lab
100
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
July, 2018
June, 2019
BIOSAMPLE
ASSAY
184 results
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ChIP-seq
primary cell
monocyte
84
pancreatic endocrine cell
23
pancreatic ductal cell
13
skeletal muscle myoblast
13
endothelial cell of umbilical vein
10
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