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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ChIP-seq
Assay category
479
Transcription
100
DNA binding
36
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
59
histone
59
histone modification
40
transcription factor
32
broad histone mark
26
narrow histone mark
10
RNA binding protein
2
chromatin remodeller
1
control
Date released
62
August, 2017
24
October, 2019
9
June, 2019
5
October, 2018
Available data
99
bam
99
bigWig
82
bed narrowPeak
66
fastq
39
bigBed narrowPeak
11
bed bed3+
1
bed broadPeak
1
tagAlign
Organism
100
Homo sapiens
Biosample type
48
in vitro differentiated cells
43
tissue
9
primary cell
Organ
429
liver
163
pancreas
123
brain
101
epithelium
79
vasculature
76
blood vessel
76
connective tissue
74
heart
54
blood
54
bodily fluid
48
limb
39
kidney
27
musculature of body
25
artery
24
nerve
19
adipose tissue
15
embryo
12
spleen
12
vein
2
eye
1
pituitary gland
Project
100
AMP
Genome assembly (visualization)
100
hg19
99
GRCh38
Lab
100
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
BIOSAMPLE
ASSAY
100 results
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ChIP-seq
in vitro differentiated cells
adipocyte
48
tissue
tibial nerve
24
white adipose tissue
12
omental fat pad
3
subcutaneous adipose tissue
2
adipose tissue
1
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primary cell
mesenchymal stem cell
6
cardiac fibroblast
3
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