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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
Assay category
114
DNA binding
6
DNA accessibility
1
DNA methylation
Target of assay
75
histone
75
histone modification
38
narrow histone mark
36
broad histone mark
24
transcription factor
21
control
RNA binding protein
3
chromatin remodeller
Date released
287
November, 2017
160
May, 2021
114
August, 2017
47
October, 2019
44
December, 2017
42
August, 2021
39
November, 2018
32
September, 2018
27
June, 2019
25
December, 2018
24
February, 2018
12
January, 2019
12
November, 2019
8
February, 2021
4
May, 2019
1
March, 2020
Available data
100
bam
100
fastq
82
bigWig
64
bed narrowPeak
26
tagAlign
12
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
7
bed bed3+
Organism
114
Homo sapiens
Biosample type
tissue
63
in vitro differentiated cells
51
primary cell
Organ
63
connective tissue
38
pancreas
26
epithelium
Project
114
AMP
Genome assembly (visualization)
83
hg19
82
GRCh38
Lab
114
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
audit script error
biosample_type!
tissue
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
114 results
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ChIP-seq
in vitro differentiated cells
adipocyte
63
primary cell
pancreatic alpha cell
13
pancreatic beta cell
13
skeletal muscle myoblast
13
pancreatic endocrine cell
12
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