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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
Assay category
208
DNA accessibility
40
DNA binding
5
3D chromatin structure
2
Transcription
Target of assay
25
histone
25
histone modification
19
transcription factor
narrow histone mark
12
broad histone mark
9
control
2
RNA binding protein
Date released
27
August, 2017
10
December, 2017
2
September, 2017
1
August, 2021
Available data
1166
bam
945
bigWig
891
bed narrowPeak
739
fastq
647
bigBed narrowPeak
212
tagAlign
83
bed broadPeak
65
bigBed broadPeak
40
bed bed3+
3
tar
Organism
40
Homo sapiens
Biosample type
22
tissue
15
in vitro differentiated cells
2
stem cell
1
primary cell
Organ
15
pancreas
11
connective tissue
4
adipose tissue
4
liver
2
embryo
1
epithelium
Project
40
AMP
Genome assembly (visualization)
40
GRCh38
40
hg19
Lab
40
AMP-T2D consortium
Audit category:
11
missing controlled_by
Audit category:
9
inconsistent control read length
audit.ERROR.category!
audit script error
month_released!
October, 2017
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
40 results
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Clear Filters
ChIP-seq
tissue
islet of Langerhans
15
white adipose tissue
4
liver
3
in vitro differentiated cells
adipocyte
7
Posterior foregut
2
definitive endodermal cell
2
pancreatic endoderm
2
primitive gut cell
2
stem cell
hESC
2
primary cell
hepatocyte
1
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