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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
254
ChIP-seq
Assay category
423
Transcription
273
DNA accessibility
254
DNA binding
56
DNA methylation
10
3D chromatin structure
Target of assay
220
histone
220
histone modification
114
broad histone mark
106
narrow histone mark
27
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
121
May, 2021
53
August, 2017
32
September, 2018
24
October, 2019
9
June, 2019
9
November, 2017
4
August, 2021
2
May, 2019
Available data
227
bigWig
217
bam
206
bed narrowPeak
100
tagAlign
94
fastq
37
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
3
bed bed3+
Organism
254
Homo sapiens
Biosample type
797
tissue
453
cell line
254
primary cell
191
in vitro differentiated cells
3
stem cell
Organ
86
epithelium
70
pancreas
23
vasculature
20
blood vessel
17
vein
9
brain
9
kidney
4
liver
3
eye
2
musculature of body
1
connective tissue
1
heart
Project
170
AMP
84
T1D
Genome assembly (visualization)
227
hg19
187
GRCh38
Lab
137
AMP-T2D consortium
117
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
month_released!
April, 2019
organ_slims!
artery
BIOSAMPLE
ASSAY
254 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
pancreatic endocrine cell
23
endothelial cell of umbilical vein
17
skeletal muscle myoblast
15
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