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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
ChIP-seq
Assay category
254
Transcription
203
DNA binding
108
DNA accessibility
4
3D chromatin structure
Target of assay
186
histone
186
histone modification
97
broad histone mark
89
narrow histone mark
10
RNA binding protein
10
transcription factor
7
control
1
chromatin remodeller
Date released
117
May, 2021
29
August, 2017
23
June, 2019
18
October, 2019
9
November, 2017
4
May, 2019
3
August, 2021
Available data
203
bigWig
198
bam
194
bed narrowPeak
100
tagAlign
57
bigBed narrowPeak
50
fastq
21
bed broadPeak
21
bigBed broadPeak
3
bed bed3+
Organism
203
Homo sapiens
Biosample type
590
tissue
cell line
203
primary cell
110
in vitro differentiated cells
2
stem cell
Organ
49
epithelium
18
vasculature
15
blood vessel
14
pancreas
12
kidney
12
vein
9
brain
9
connective tissue
8
musculature of body
3
heart
3
liver
2
eye
Project
119
AMP
84
T1D
Genome assembly (visualization)
203
hg19
163
GRCh38
Lab
117
Kyle Gaulton, UCSD
86
AMP-T2D consortium
Audit category:
20
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
biosample_type!
cell line
BIOSAMPLE
ASSAY
203 results
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ChIP-seq
primary cell
monocyte
84
CD8-positive, alpha-beta T cell
33
skeletal muscle myoblast
15
endothelial cell of umbilical vein
12
epithelial cell of proximal tubule
8
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