Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
438
ChIP-seq
Assay category
438
DNA binding
193
Transcription
29
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
326
transcription factor
108
control
102
histone modification
histone
81
recombinant protein
59
narrow histone mark
56
RNA binding protein
42
broad histone mark
17
chromatin remodeller
2
other context
2
other post-translational modification
Date released
291
November, 2017
46
December, 2017
46
November, 2018
23
May, 2020
16
August, 2017
16
August, 2021
Available data
419
bam
396
fastq
339
bigWig
322
bed narrowPeak
306
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
28
tagAlign
3
bed bed3+
3
tar
Organism
438
Homo sapiens
Biosample type
348
cell line
86
tissue
3
in vitro differentiated cells
1
primary cell
Organ
438
liver
61
pancreas
59
blood
59
bodily fluid
58
connective tissue
37
heart
36
epithelium
31
brain
31
vasculature
29
adipose tissue
29
blood vessel
22
kidney
17
limb
14
artery
14
spleen
11
nerve
10
embryo
6
musculature of body
2
eye
2
vein
Project
438
AMP
Genome assembly (visualization)
336
hg19
287
GRCh38
Lab
423
AMP-T2D consortium
15
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
missing controlled_by
Audit category:
10
inconsistent control read length
2
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
ovary
target.investigated_as!
histone
BIOSAMPLE
ASSAY
438 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
cell line
HepG2
348
tissue
liver
81
right lobe of liver
5
in vitro differentiated cells
hepatocyte
3
primary cell
hepatocyte
1
Download