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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
Assay category
195
Transcription
120
DNA binding
107
DNA accessibility
53
DNA methylation
5
3D chromatin structure
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
26
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
24
October, 2019
22
August, 2017
21
September, 2018
18
December, 2017
13
November, 2019
6
June, 2019
6
November, 2017
5
May, 2019
4
August, 2021
May, 2021
1
March, 2020
Available data
120
bam
93
bigWig
89
bed narrowPeak
67
fastq
36
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
4
tagAlign
3
bed bed3+
Organism
120
Homo sapiens
Biosample type
88
primary cell
18
in vitro differentiated cells
14
cell line
Organ
525
liver
218
brain
205
pancreas
147
connective tissue
134
heart
120
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
20
spleen
19
embryo
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
119
AMP
1
T1D
Genome assembly (visualization)
93
hg19
89
GRCh38
Lab
120
AMP-T2D consortium
Audit category:
23
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
files.file_type!
cool
month_released!
May, 2021
BIOSAMPLE
ASSAY
120 results
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Clear Filters
ChIP-seq
primary cell
endothelial cell of umbilical vein
17
pancreatic ductal cell
13
pancreatic alpha cell
11
pancreatic beta cell
11
epithelial cell of proximal tubule
10
+ See 6 more…
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
3
cell line
EndoC_BH1
14
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