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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
281
ChIP-seq
Assay category
438
Transcription
288
DNA accessibility
281
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
238
histone
238
histone modification
123
broad histone mark
115
narrow histone mark
33
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
121
May, 2021
52
August, 2017
32
September, 2018
31
June, 2019
24
October, 2019
9
November, 2017
5
May, 2019
4
August, 2021
3
December, 2017
Available data
248
bigWig
244
bam
227
bed narrowPeak
100
tagAlign
96
fastq
56
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
6
bed bed3+
Organism
281
Homo sapiens
Biosample type
907
tissue
476
cell line
278
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
92
epithelium
70
pancreas
23
vasculature
20
blood vessel
17
vein
15
kidney
12
connective tissue
10
musculature of body
9
brain
5
heart
4
liver
3
eye
Project
197
AMP
84
T1D
Genome assembly (visualization)
249
hg19
209
GRCh38
Lab
164
AMP-T2D consortium
117
Kyle Gaulton, UCSD
Audit category:
25
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
7
inconsistent control read length
2
inconsistent assembly
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
281 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
pancreatic endocrine cell
23
endothelial cell of umbilical vein
17
skeletal muscle myoblast
14
+ See 18 more…
stem cell
hESC
3
See all biosamples
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