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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
266
ChIP-seq
Assay category
421
Transcription
280
DNA accessibility
266
DNA binding
57
DNA methylation
9
3D chromatin structure
Target of assay
228
histone
228
histone modification
118
broad histone mark
110
narrow histone mark
29
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
121
May, 2021
52
August, 2017
32
September, 2018
24
October, 2019
19
June, 2019
9
November, 2017
5
May, 2019
4
August, 2021
Available data
237
bigWig
229
bam
216
bed narrowPeak
100
tagAlign
93
fastq
47
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
3
bed bed3+
Organism
266
Homo sapiens
Biosample type
833
tissue
476
cell line
266
primary cell
131
in vitro differentiated cells
3
stem cell
Organ
92
epithelium
70
pancreas
23
vasculature
20
blood vessel
17
vein
15
kidney
connective tissue
10
musculature of body
9
brain
5
heart
4
liver
3
eye
Project
182
AMP
84
T1D
Genome assembly (visualization)
237
hg19
197
GRCh38
Lab
149
AMP-T2D consortium
117
Kyle Gaulton, UCSD
Audit category:
14
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
266 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
pancreatic endocrine cell
23
endothelial cell of umbilical vein
17
skeletal muscle myoblast
14
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