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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
833
ChIP-seq
Assay category
833
DNA binding
769
Transcription
462
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
595
histone modification
594
histone
311
narrow histone mark
283
broad histone mark
161
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
194
October, 2019
126
August, 2017
115
May, 2019
82
November, 2017
80
April, 2019
51
October, 2018
50
May, 2020
48
December, 2017
40
May, 2024
15
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
2
March, 2020
Available data
685
bam
596
bigWig
588
bed narrowPeak
371
bigBed narrowPeak
230
tagAlign
183
fastq
34
bed broadPeak
24
bed bed3+
1
tagAlign bed3+
Organism
826
Homo sapiens
Biosample type
833
tissue
484
cell line
267
primary cell
131
in vitro differentiated cells
3
stem cell
Organ
209
brain
155
liver
123
heart
117
pancreas
connective tissue
73
adipose tissue
73
blood vessel
73
vasculature
66
limb
35
nerve
29
musculature of body
28
artery
27
kidney
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
831
AMP
2
T1D
Genome assembly (visualization)
572
GRCh38
510
hg19
Lab
793
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
award.project!
HPAP
organ_slims!
connective tissue
spinal cord
BIOSAMPLE
ASSAY
833 results
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Clear Filters
ChIP-seq
tissue
liver
145
islet of Langerhans
70
left cardiac atrium
40
body of pancreas
35
heart left ventricle
35
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