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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1068
ChIP-seq
Assay category
1499
Transcription
1068
DNA binding
744
DNA accessibility
95
DNA methylation
26
3D chromatin structure
Target of assay
749
histone modification
748
histone
388
narrow histone mark
360
broad histone mark
215
control
104
transcription factor
38
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
Date released
229
August, 2017
219
October, 2019
May, 2021
120
May, 2019
91
November, 2017
80
April, 2019
74
October, 2018
51
December, 2017
50
May, 2020
40
May, 2024
32
September, 2018
31
June, 2019
15
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
4
August, 2021
2
March, 2020
Available data
883
bam
747
bigWig
709
bed narrowPeak
434
bigBed narrowPeak
317
fastq
254
tagAlign
56
bed broadPeak
34
bed bed3+
21
bigBed broadPeak
1
tagAlign bed3+
Organism
1061
Homo sapiens
Biosample type
907
tissue
cell line
158
primary cell
in vitro differentiated cells
3
stem cell
Organ
218
brain
187
pancreas
159
liver
128
heart
96
vasculature
93
blood vessel
92
epithelium
86
connective tissue
73
adipose tissue
66
limb
42
kidney
39
musculature of body
35
nerve
28
artery
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
1066
AMP
2
T1D
Genome assembly (visualization)
716
GRCh38
662
hg19
Lab
1028
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
27
inconsistent ontology term
Audit category:
70
missing controlled_by
Audit category:
13
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
biosample_type!
cell line
in vitro differentiated cells
files.file_type!
txt
month_released!
May, 2021
BIOSAMPLE
ASSAY
1068 results
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Clear Filters
ChIP-seq
tissue
liver
145
islet of Langerhans
71
left cardiac atrium
40
subcutaneous abdominal adipose tissue
36
body of pancreas
35
+ See 103 more…
primary cell
pancreatic endocrine cell
23
endothelial cell of umbilical vein
17
skeletal muscle myoblast
15
pancreatic alpha cell
13
pancreatic beta cell
13
+ See 14 more…
stem cell
hESC
3
See all biosamples
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