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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
996
ChIP-seq
Assay category
1264
Transcription
996
DNA binding
750
DNA accessibility
90
DNA methylation
26
3D chromatin structure
Target of assay
743
histone modification
742
histone
394
narrow histone mark
348
broad histone mark
171
control
82
transcription factor
28
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
Date released
219
October, 2019
179
August, 2017
121
May, 2021
May, 2019
91
November, 2017
80
April, 2019
51
December, 2017
51
October, 2018
50
May, 2020
40
May, 2024
32
September, 2018
31
June, 2019
15
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
4
August, 2021
2
March, 2020
Available data
810
bam
748
bigWig
719
bed narrowPeak
331
bigBed narrowPeak
330
tagAlign
280
fastq
55
bed broadPeak
30
bed bed3+
21
bigBed broadPeak
1
tagAlign bed3+
Organism
989
Homo sapiens
Biosample type
719
tissue
cell line
274
primary cell
in vitro differentiated cells
3
stem cell
Organ
190
brain
185
pancreas
159
liver
107
heart
87
epithelium
86
connective tissue
adipose tissue
59
limb
46
vasculature
43
blood vessel
37
kidney
35
nerve
32
musculature of body
23
artery
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
910
AMP
86
T1D
Genome assembly (visualization)
686
GRCh38
663
hg19
Lab
839
AMP-T2D consortium
117
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
24
inconsistent ontology term
Audit category:
58
missing controlled_by
Audit category:
13
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
biosample_type!
cell line
in vitro differentiated cells
month_released!
May, 2019
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
996 results
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Clear Filters
ChIP-seq
tissue
liver
145
islet of Langerhans
71
left cardiac atrium
40
heart left ventricle
35
tibial nerve
35
+ See 89 more…
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
pancreatic endocrine cell
23
endothelial cell of umbilical vein
17
skeletal muscle myoblast
15
+ See 17 more…
stem cell
hESC
3
See all biosamples
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