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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1026
ChIP-seq
Assay category
1367
Transcription
1026
DNA binding
513
DNA accessibility
38
DNA methylation
20
3D chromatin structure
Target of assay
672
histone modification
671
histone
352
narrow histone mark
318
broad histone mark
211
control
143
transcription factor
39
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
Date released
243
August, 2017
195
October, 2019
115
May, 2019
94
December, 2017
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
43
May, 2021
40
May, 2024
24
February, 2018
21
August, 2021
15
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
2
March, 2020
Available data
802
bam
675
bigWig
649
bed narrowPeak
343
fastq
334
bigBed narrowPeak
212
tagAlign
50
bed bed3+
29
bed broadPeak
1
tagAlign bed3+
Organism
1019
Homo sapiens
Biosample type
825
tissue
primary cell
198
in vitro differentiated cells
cell line
3
stem cell
Organ
170
liver
141
connective tissue
127
brain
123
heart
120
pancreas
73
adipose tissue
73
blood vessel
73
vasculature
66
limb
35
nerve
29
musculature of body
28
artery
27
kidney
22
embryo
22
epithelium
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
1024
AMP
2
T1D
Genome assembly (visualization)
656
GRCh38
645
hg19
Lab
949
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
37
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
9
inconsistent ontology term
Audit category:
32
missing controlled_by
Audit category:
25
inconsistent control read length
1
inconsistent assembly
biosample_type!
cell line
primary cell
files.file_type!
ibed
month_released!
November, 2017
BIOSAMPLE
ASSAY
1026 results
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Clear Filters
ChIP-seq
tissue
liver
145
islet of Langerhans
71
left cardiac atrium
40
subcutaneous abdominal adipose tissue
36
body of pancreas
35
+ See 100 more…
in vitro differentiated cells
adipocyte
67
embryonic stem cell
40
neural progenitor cell
21
pancreatic endoderm
18
hepatocyte
15
+ See 8 more…
stem cell
hESC
3
See all biosamples
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