Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
735
ChIP-seq
Assay category
735
DNA binding
553
Transcription
319
DNA accessibility
59
DNA methylation
14
3D chromatin structure
1
DNA sequencing
Target of assay
371
transcription factor
277
histone
277
histone modification
142
broad histone mark
135
narrow histone mark
113
control
89
recombinant protein
75
RNA binding protein
chromatin remodeller
2
other context
2
other post-translational modification
Date released
309
November, 2017
122
May, 2021
53
November, 2018
52
August, 2017
47
October, 2019
32
September, 2018
31
June, 2019
25
December, 2018
22
August, 2021
13
November, 2019
12
January, 2019
8
February, 2021
5
May, 2019
3
December, 2017
1
March, 2020
Available data
679
bam
629
bigWig
589
bed narrowPeak
486
fastq
379
bigBed narrowPeak
120
tagAlign
74
bed broadPeak
74
bigBed broadPeak
6
bed bed3+
3
tar
Organism
735
Homo sapiens
Biosample type
tissue
454
cell line
278
primary cell
in vitro differentiated cells
3
stem cell
Organ
362
liver
107
epithelium
98
pancreas
50
blood
50
bodily fluid
29
vasculature
26
blood vessel
25
kidney
17
vein
12
connective tissue
11
heart
10
musculature of body
9
brain
6
artery
3
eye
Project
649
AMP
86
T1D
Genome assembly (visualization)
626
hg19
527
GRCh38
Lab
600
AMP-T2D consortium
117
Kyle Gaulton, UCSD
18
Bing Ren, UCSD
Audit category:
50
inconsistent ontology term
Audit category:
51
missing controlled_by
Audit category:
22
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
biosample_type!
in vitro differentiated cells
tissue
files.file_type!
xls
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
735 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
cell line
HepG2
358
GM12878
50
EndoC_BH1
15
Panc1
13
smooth muscle cell of the coronary artery
6
+ See 4 more…
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
pancreatic endocrine cell
23
endothelial cell of umbilical vein
17
skeletal muscle myoblast
14
+ See 18 more…
stem cell
hESC
3
See all biosamples
Download