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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
654
ChIP-seq
Assay category
654
DNA binding
222
Transcription
54
DNA accessibility
6
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
408
transcription factor
132
histone
132
histone modification
109
control
89
recombinant protein
75
RNA binding protein
66
broad histone mark
65
narrow histone mark
33
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
67
August, 2017
60
November, 2018
46
December, 2017
40
May, 2021
39
August, 2021
27
December, 2018
24
February, 2018
18
January, 2019
10
October, 2019
8
February, 2021
Available data
583
bam
543
fastq
507
bigWig
483
bed narrowPeak
361
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
57
tagAlign
22
bed bed3+
3
tar
Organism
654
Homo sapiens
Biosample type
tissue
456
cell line
primary cell
195
in vitro differentiated cells
3
stem cell
Organ
393
liver
67
connective tissue
60
blood
60
bodily fluid
37
epithelium
pancreas
22
embryo
10
kidney
6
artery
6
blood vessel
6
heart
6
vasculature
Project
654
AMP
Genome assembly (visualization)
508
hg19
448
GRCh38
Lab
599
AMP-T2D consortium
37
Kyle Gaulton, UCSD
18
Bing Ren, UCSD
Audit category:
17
inconsistent ontology term
1
inconsistent control
Audit category:
19
missing controlled_by
Audit category:
45
inconsistent control read length
8
inconsistent control run_type
biosample_type!
primary cell
tissue
files.file_type!
csv
organ_slims!
pancreas
BIOSAMPLE
ASSAY
654 results
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Clear Filters
ChIP-seq
cell line
HepG2
378
GM12878
60
smooth muscle cell of the coronary artery
6
RCC 7860 HIF1a re-expression
4
RCC 7860 HIF2a over-expression
3
+ See 2 more…
in vitro differentiated cells
adipocyte
67
embryonic stem cell
40
neural progenitor cell
21
pancreatic endoderm
18
hepatocyte
15
+ See 7 more…
stem cell
hESC
3
See all biosamples
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