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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
478
ChIP-seq
Assay category
478
DNA binding
22
DNA accessibility
4
3D chromatin structure
2
Transcription
1
DNA methylation
1
DNA sequencing
Target of assay
357
transcription factor
89
recombinant protein
78
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
60
November, 2018
27
December, 2018
23
October, 2019
18
August, 2021
18
January, 2019
13
November, 2019
2
February, 2021
1
March, 2020
1
May, 2021
Available data
459
bam
420
fastq
407
bigWig
388
bed narrowPeak
353
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
14
tagAlign
3
tar
Organism
478
Homo sapiens
Biosample type
834
tissue
478
cell line
256
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
378
liver
60
blood
60
bodily fluid
28
pancreas
15
epithelium
10
kidney
6
artery
6
blood vessel
6
heart
vasculature
Project
476
AMP
2
T1D
Genome assembly (visualization)
403
hg19
342
GRCh38
Lab
460
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
25
inconsistent ontology term
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
files.file_type!
tsv
organ_slims!
vasculature
BIOSAMPLE
ASSAY
478 results
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ChIP-seq
cell line
HepG2
378
GM12878
60
EndoC_BH1
15
Panc1
13
RCC 7860 HIF1a re-expression
4
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