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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
454
ChIP-seq
Assay category
454
DNA binding
94
Transcription
30
DNA accessibility
3
3D chromatin structure
1
DNA methylation
Target of assay
343
transcription factor
82
recombinant protein
73
control
64
RNA binding protein
35
histone
35
histone modification
30
chromatin remodeller
18
broad histone mark
17
narrow histone mark
other context
2
other post-translational modification
Date released
313
November, 2017
60
November, 2018
27
December, 2018
August, 2021
18
January, 2019
13
November, 2019
13
October, 2019
8
February, 2021
1
March, 2020
1
May, 2021
Available data
453
bam
418
fastq
388
bigWig
369
bed narrowPeak
351
bigBed narrowPeak
57
bed broadPeak
57
bigBed broadPeak
20
tagAlign
3
tar
Organism
454
Homo sapiens
Biosample type
877
tissue
454
cell line
260
primary cell
177
in vitro differentiated cells
3
stem cell
Organ
358
liver
60
blood
60
bodily fluid
28
pancreas
15
epithelium
kidney
6
artery
6
blood vessel
6
heart
6
vasculature
Project
452
AMP
2
T1D
Genome assembly (visualization)
384
hg19
337
GRCh38
Lab
454
AMP-T2D consortium
Audit category:
15
inconsistent ontology term
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
month_released!
August, 2021
organ_slims!
kidney
target.investigated_as!
other context
BIOSAMPLE
ASSAY
454 results
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ChIP-seq
cell line
HepG2
358
GM12878
60
EndoC_BH1
15
Panc1
13
smooth muscle cell of the coronary artery
6
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