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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1058
ChIP-seq
Assay category
1365
Transcription
1058
DNA binding
332
DNA accessibility
38
DNA methylation
20
3D chromatin structure
Target of assay
720
histone modification
719
histone
369
narrow histone mark
349
broad histone mark
214
control
124
transcription factor
37
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
Date released
210
August, 2017
195
October, 2019
115
May, 2019
82
November, 2017
80
April, 2019
79
December, 2017
74
October, 2018
50
May, 2020
43
May, 2021
40
May, 2024
24
February, 2018
21
August, 2021
15
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
4
September, 2017
2
March, 2020
Available data
868
bam
730
bigWig
705
bed narrowPeak
391
bigBed narrowPeak
340
fastq
278
tagAlign
bed bed3+
35
bed broadPeak
1
tagAlign bed3+
Organism
1051
Homo sapiens
Biosample type
879
tissue
484
cell line
276
primary cell
179
in vitro differentiated cells
Organ
209
brain
167
liver
130
connective tissue
123
heart
99
pancreas
73
blood vessel
73
vasculature
69
adipose tissue
66
limb
35
nerve
29
musculature of body
28
artery
27
kidney
22
epithelium
20
spleen
19
embryo
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
1056
AMP
2
T1D
Genome assembly (visualization)
663
GRCh38
601
hg19
Lab
981
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
37
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
9
inconsistent ontology term
Audit category:
18
missing controlled_by
Audit category:
15
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
1058 results
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Clear Filters
ChIP-seq
tissue
liver
142
islet of Langerhans
50
left cardiac atrium
40
subcutaneous abdominal adipose tissue
36
body of pancreas
35
+ See 103 more…
in vitro differentiated cells
adipocyte
60
embryonic stem cell
40
neural progenitor cell
21
hepatocyte
15
pancreatic endoderm
15
+ See 8 more…
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