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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
ChIP-seq
Assay category
149
DNA binding
138
Transcription
42
DNA accessibility
4
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
45
August, 2017
32
December, 2017
27
May, 2021
24
February, 2018
21
August, 2021
Available data
109
bam
87
fastq
78
bed narrowPeak
78
bigWig
36
tagAlign
13
bed bed3+
12
bigBed narrowPeak
Organism
149
Homo sapiens
Biosample type
778
tissue
253
primary cell
149
in vitro differentiated cells
109
cell line
3
stem cell
Organ
45
connective tissue
19
embryo
19
epithelium
13
liver
2
pancreas
Project
149
AMP
Genome assembly (visualization)
83
GRCh38
82
hg19
Lab
124
AMP-T2D consortium
25
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
7
inconsistent control read length
files.file_type!
bed broadPeak
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
149 results
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ChIP-seq
in vitro differentiated cells
adipocyte
45
embryonic stem cell
28
neural progenitor cell
21
pancreatic endoderm
15
hepatocyte
13
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