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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
161
ChIP-seq
Assay category
161
DNA binding
133
Transcription
38
DNA accessibility
4
3D chromatin structure
Target of assay
92
histone
92
histone modification
46
broad histone mark
45
narrow histone mark
37
transcription factor
32
control
6
RNA binding protein
3
chromatin remodeller
Date released
67
August, 2017
43
December, 2017
24
February, 2018
21
August, 2021
6
May, 2021
Available data
146
bam
120
fastq
115
bigWig
110
bed narrowPeak
40
tagAlign
19
bed bed3+
14
bigBed narrowPeak
Organism
161
Homo sapiens
Biosample type
904
tissue
482
cell line
162
primary cell
161
in vitro differentiated cells
3
stem cell
Organ
67
connective tissue
22
embryo
22
epithelium
15
liver
3
pancreas
Project
161
AMP
Genome assembly (visualization)
120
GRCh38
119
hg19
Lab
161
AMP-T2D consortium
Kyle Gaulton, UCSD
Audit category:
7
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
lab.title!
Kyle Gaulton, UCSD
month_released!
January, 2018
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
161 results
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ChIP-seq
in vitro differentiated cells
adipocyte
67
neural progenitor cell
21
pancreatic endoderm
18
hepatocyte
15
definitive endodermal cell
8
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