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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
162
ChIP-seq
Assay category
436
Transcription
285
DNA accessibility
162
DNA binding
58
DNA methylation
8
3D chromatin structure
Target of assay
124
histone
124
histone modification
62
broad histone mark
62
narrow histone mark
28
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
41
August, 2017
37
May, 2021
32
September, 2018
31
June, 2019
9
November, 2017
7
October, 2019
5
May, 2019
Available data
235
bigWig
225
bam
216
bed narrowPeak
tagAlign
94
fastq
47
bigBed narrowPeak
19
bed broadPeak
19
bigBed broadPeak
3
bed bed3+
Organism
162
Homo sapiens
Biosample type
669
tissue
464
cell line
162
primary cell
158
in vitro differentiated cells
3
stem cell
Organ
88
epithelium
70
pancreas
23
vasculature
20
blood vessel
vein
15
kidney
12
connective tissue
10
musculature of body
9
brain
5
heart
3
eye
Project
162
AMP
Genome assembly (visualization)
136
hg19
99
GRCh38
Lab
129
AMP-T2D consortium
33
Kyle Gaulton, UCSD
Audit category:
25
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
tagAlign
organ_slims!
vein
BIOSAMPLE
ASSAY
162 results
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ChIP-seq
primary cell
CD8-positive, alpha-beta T cell
33
pancreatic endocrine cell
23
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic ductal cell
13
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