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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
160
ChIP-seq
Assay category
160
DNA binding
29
DNA accessibility
Target of assay
155
histone
155
histone modification
85
broad histone mark
70
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
114
May, 2021
19
June, 2019
14
August, 2017
11
September, 2018
2
November, 2017
Available data
177
bigWig
160
bed narrowPeak
150
bam
96
tagAlign
41
fastq
35
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
Organism
160
Homo sapiens
Biosample type
595
tissue
379
cell line
160
primary cell
92
in vitro differentiated cells
2
stem cell
Organ
epithelium
46
pancreas
14
vasculature
12
blood vessel
12
kidney
10
vein
9
connective tissue
8
musculature of body
6
brain
3
heart
3
liver
2
eye
Project
84
T1D
76
AMP
Genome assembly (visualization)
160
hg19
129
GRCh38
Lab
114
Kyle Gaulton, UCSD
46
AMP-T2D consortium
Audit category:
16
inconsistent ontology term
Audit category:
11
missing controlled_by
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
organ_slims!
epithelium
BIOSAMPLE
ASSAY
160 results
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ChIP-seq
primary cell
monocyte
84
CD8-positive, alpha-beta T cell
30
skeletal muscle myoblast
14
pancreatic endocrine cell
11
skeletal muscle satellite cell
7
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