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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
260
ChIP-seq
Assay category
434
Transcription
287
DNA accessibility
260
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
226
histone
226
histone modification
118
broad histone mark
108
narrow histone mark
27
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
121
May, 2021
53
August, 2017
32
September, 2018
24
October, 2019
21
June, 2019
November, 2017
5
May, 2019
4
August, 2021
Available data
230
bigWig
223
bam
212
bed narrowPeak
100
tagAlign
85
fastq
43
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
3
bed bed3+
Organism
260
Homo sapiens
Biosample type
793
tissue
260
primary cell
198
in vitro differentiated cells
169
cell line
3
stem cell
Organ
86
epithelium
70
pancreas
17
blood vessel
17
vasculature
17
vein
15
kidney
12
connective tissue
musculature of body
5
heart
4
liver
3
eye
Project
176
AMP
84
T1D
Genome assembly (visualization)
230
hg19
193
GRCh38
Lab
143
AMP-T2D consortium
117
Kyle Gaulton, UCSD
Audit category:
17
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
November, 2017
organ_slims!
musculature of body
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
260 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
pancreatic endocrine cell
23
endothelial cell of umbilical vein
17
skeletal muscle myoblast
15
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