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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
701
ChIP-seq
Assay category
1208
Transcription
701
DNA binding
438
DNA accessibility
37
DNA methylation
16
3D chromatin structure
Target of assay
446
histone modification
445
histone
234
broad histone mark
211
narrow histone mark
161
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
176
August, 2017
111
October, 2019
87
May, 2019
80
April, 2019
74
October, 2018
51
December, 2017
50
May, 2020
40
May, 2024
10
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
2
March, 2020
Available data
538
bam
454
bigWig
433
bed narrowPeak
289
bigBed narrowPeak
214
fastq
120
tagAlign
31
bed bed3+
26
bed broadPeak
Organism
694
Homo sapiens
Biosample type
698
tissue
484
cell line
270
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
brain
155
liver
123
heart
117
pancreas
74
connective tissue
73
adipose tissue
73
blood vessel
73
vasculature
66
limb
35
nerve
29
musculature of body
28
artery
27
kidney
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
699
AMP
2
T1D
Genome assembly (visualization)
428
GRCh38
418
hg19
Lab
661
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
Audit category:
22
missing controlled_by
Audit category:
8
inconsistent control read length
1
inconsistent assembly
organ_slims!
brain
BIOSAMPLE
ASSAY
701 results
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Clear Filters
ChIP-seq
tissue
liver
145
islet of Langerhans
71
left cardiac atrium
40
subcutaneous abdominal adipose tissue
36
body of pancreas
35
+ See 35 more…
stem cell
hESC
3
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