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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
560
ChIP-seq
Assay category
560
DNA binding
213
DNA accessibility
Target of assay
485
histone modification
484
histone
251
narrow histone mark
233
broad histone mark
75
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
145
October, 2019
93
May, 2019
65
April, 2019
52
November, 2017
45
October, 2018
40
May, 2024
36
August, 2017
36
December, 2017
27
May, 2020
7
November, 2018
6
January, 2019
3
December, 2018
3
October, 2017
2
March, 2020
Available data
722
bam
615
bigWig
595
bed narrowPeak
377
bigBed narrowPeak
238
tagAlign
220
fastq
bed broadPeak
28
bed bed3+
1
tagAlign bed3+
Organism
560
Homo sapiens
Biosample type
560
tissue
340
cell line
197
primary cell
110
in vitro differentiated cells
2
stem cell
Organ
155
brain
107
heart
89
liver
61
pancreas
57
blood vessel
57
vasculature
48
limb
24
nerve
21
artery
20
kidney
12
spleen
6
adipose tissue
6
connective tissue
6
musculature of body
1
pituitary gland
Project
558
AMP
2
T1D
Genome assembly (visualization)
550
GRCh38
468
hg19
Lab
520
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
bed broadPeak
organ_slims!
vein
BIOSAMPLE
ASSAY
560 results
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Clear Filters
ChIP-seq
tissue
liver
82
left cardiac atrium
40
heart left ventricle
29
body of pancreas
26
tibial nerve
24
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