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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
841
ChIP-seq
Assay category
1198
Transcription
841
DNA binding
426
DNA accessibility
37
DNA methylation
12
3D chromatin structure
Target of assay
579
histone modification
578
histone
309
narrow histone mark
269
broad histone mark
168
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
176
August, 2017
136
October, 2019
108
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
40
May, 2024
15
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
2
March, 2020
Available data
657
bam
567
bigWig
547
bed narrowPeak
329
bigBed narrowPeak
238
tagAlign
220
fastq
35
bed broadPeak
28
bed bed3+
1
tagAlign bed3+
Organism
834
Homo sapiens
Biosample type
841
tissue
484
cell line
279
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
209
brain
155
liver
123
heart
117
pancreas
74
connective tissue
73
adipose tissue
73
blood vessel
73
vasculature
limb
35
nerve
29
musculature of body
28
artery
27
kidney
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
839
AMP
2
T1D
Genome assembly (visualization)
543
GRCh38
481
hg19
Lab
801
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
month_released!
February, 2020
organ_slims!
limb
BIOSAMPLE
ASSAY
841 results
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Clear Filters
ChIP-seq
tissue
liver
145
islet of Langerhans
70
left cardiac atrium
40
subcutaneous abdominal adipose tissue
36
body of pancreas
35
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