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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
900
ChIP-seq
Assay category
1226
Transcription
900
DNA binding
470
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
181
control
91
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
195
October, 2019
176
August, 2017
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
40
May, 2024
15
October, 2017
10
November, 2018
December, 2018
7
January, 2019
6
September, 2017
2
March, 2020
Available data
715
bam
612
bigWig
592
bed narrowPeak
374
bigBed narrowPeak
238
tagAlign
213
fastq
35
bed broadPeak
28
bed bed3+
1
tagAlign bed3+
Organism
893
Homo sapiens
Biosample type
900
tissue
457
cell line
279
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
209
brain
155
liver
123
heart
117
pancreas
74
connective tissue
73
adipose tissue
73
blood vessel
73
vasculature
66
limb
35
nerve
29
musculature of body
28
artery
27
kidney
13
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
898
AMP
2
T1D
Genome assembly (visualization)
587
GRCh38
526
hg19
Lab
860
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
August, 2018
December, 2018
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
900 results
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Clear Filters
ChIP-seq
tissue
liver
145
islet of Langerhans
71
left cardiac atrium
40
subcutaneous abdominal adipose tissue
36
body of pancreas
35
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