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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
831
ChIP-seq
Assay category
831
DNA binding
828
Transcription
462
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
596
histone modification
595
histone
312
narrow histone mark
283
broad histone mark
161
control
77
transcription factor
23
RNA binding protein
other context
other post-translational modification
2
chromatin remodeller
Date released
195
October, 2019
126
August, 2017
115
May, 2019
82
November, 2017
80
April, 2019
51
October, 2018
50
May, 2020
48
December, 2017
40
May, 2024
15
October, 2017
7
December, 2018
7
January, 2019
7
November, 2018
6
September, 2017
2
March, 2020
Available data
682
bam
593
bigWig
585
bed narrowPeak
368
bigBed narrowPeak
230
tagAlign
180
fastq
34
bed broadPeak
24
bed bed3+
1
tagAlign bed3+
Organism
824
Homo sapiens
Biosample type
831
tissue
482
cell line
279
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
209
brain
155
liver
123
heart
117
pancreas
74
connective tissue
adipose tissue
73
blood vessel
73
vasculature
66
limb
35
nerve
29
musculature of body
28
artery
27
kidney
17
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
829
AMP
2
T1D
Genome assembly (visualization)
569
GRCh38
507
hg19
Lab
791
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
adipose tissue
target.investigated_as!
other context
other post-translational modification
BIOSAMPLE
ASSAY
831 results
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ChIP-seq
tissue
liver
145
islet of Langerhans
71
left cardiac atrium
40
body of pancreas
35
heart left ventricle
35
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