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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
879
ChIP-seq
Assay category
1227
Transcription
879
DNA binding
470
DNA accessibility
37
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
185
control
94
transcription factor
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
195
October, 2019
174
August, 2017
111
May, 2019
82
November, 2017
76
April, 2019
63
October, 2018
50
May, 2020
46
December, 2017
35
May, 2024
15
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
2
March, 2020
Available data
699
bam
588
bigWig
569
bed narrowPeak
357
bigBed narrowPeak
238
tagAlign
205
fastq
35
bed broadPeak
26
bed bed3+
1
tagAlign bed3+
Organism
872
Homo sapiens
Biosample type
879
tissue
419
cell line
269
primary cell
187
in vitro differentiated cells
3
stem cell
Organ
209
brain
153
liver
113
heart
109
pancreas
70
blood vessel
70
vasculature
69
connective tissue
68
adipose tissue
66
limb
35
nerve
29
musculature of body
27
artery
26
kidney
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
877
AMP
2
T1D
Genome assembly (visualization)
563
GRCh38
507
hg19
Lab
844
AMP-T2D consortium
35
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
pericardium
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
879 results
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ChIP-seq
tissue
liver
144
islet of Langerhans
69
subcutaneous abdominal adipose tissue
36
left cardiac atrium
35
tibial nerve
35
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