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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ChIP-seq
Assay category
274
DNA accessibility
170
Transcription
46
DNA binding
32
DNA methylation
28
3D chromatin structure
Target of assay
228
histone
histone modification
121
broad histone mark
107
narrow histone mark
28
control
18
transcription factor
10
RNA binding protein
Date released
20
May, 2021
19
August, 2017
August, 2021
5
May, 2024
1
November, 2017
1
October, 2017
Available data
bam
627
fastq
510
bigWig
463
bed narrowPeak
410
bigBed narrowPeak
69
tagAlign
49
bed broadPeak
49
bigBed broadPeak
28
bed bed3+
3
tar
Organism
46
Homo sapiens
Biosample type
23
tissue
19
in vitro differentiated cells
3
primary cell
1
cell line
Organ
7
connective tissue
6
pancreas
5
adipose tissue
5
heart
4
liver
3
musculature of body
1
brain
Project
46
AMP
Genome assembly (visualization)
5
GRCh38
3
hg19
Lab
21
AMP-T2D consortium
20
Kyle Gaulton, UCSD
5
Patrick T. Ellinor, Broad
files.file_type!
bam
lab.title!
Klaus Kaestner, Upenn
month_released!
August, 2021
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
46 results
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ChIP-seq
tissue
islet of Langerhans
6
left cardiac atrium
5
subcutaneous abdominal adipose tissue
5
liver
3
skeletal muscle tissue
3
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in vitro differentiated cells
embryonic stem cell
17
adipocyte
2
primary cell
CD8-positive, alpha-beta T cell
3
cell line
HepG2
1
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