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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
546
ChIP-seq
Assay category
546
DNA binding
186
Transcription
24
DNA accessibility
5
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
336
transcription factor
107
control
100
histone modification
99
histone
82
recombinant protein
58
RNA binding protein
58
narrow histone mark
41
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
50
May, 2020
49
November, 2018
45
August, 2017
19
August, 2021
5
October, 2019
Available data
510
bam
452
fastq
432
bigWig
413
bed narrowPeak
352
bigBed narrowPeak
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
bed bed3+
3
tar
Organism
546
Homo sapiens
Biosample type
378
cell line
152
tissue
15
in vitro differentiated cells
1
primary cell
Organ
546
liver
218
brain
197
pancreas
142
connective tissue
134
heart
126
epithelium
102
vasculature
99
blood vessel
69
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
20
spleen
19
embryo
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
0
stomach
Project
546
AMP
Genome assembly (visualization)
423
hg19
354
GRCh38
Lab
528
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed bed3+
month_released!
July, 2019
BIOSAMPLE
ASSAY
546 results
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Clear Filters
ChIP-seq
cell line
HepG2
378
tissue
liver
142
right lobe of liver
10
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
1
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