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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1818ChIP-seq
Assay category
  • 1916Transcription
  • 1818DNA binding
  • 623DNA accessibility
  • 97DNA methylation
  • 293D chromatin structure
  • 1DNA sequencing
Target of assay
  • 992histone modification
  • 991histone
  • 501narrow histone mark
  • 495transcription factor
  • 489broad histone mark
  • 326control
  • 112RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 406November, 2017
  • 263August, 2017
  • 242October, 2019
  • 165May, 2021
  • 120May, 2019
  • 80April, 2019
  • 79December, 2017
  • 74October, 2018
  • 70November, 2018
  • 50May, 2020
  • 40August, 2021
  • 40May, 2024
  • 34December, 2018
  • 32September, 2018
  • 31June, 2019
  • 25January, 2019
  • 24February, 2018
  • 15October, 2017
  • 13November, 2019
  • 8February, 2021
  • 4September, 2017
  • 3March, 2020
Available data
  • 1578bam
  • 1390bigWig
  • 1325bed narrowPeak
  • 857fastq
  • 801bigBed narrowPeak
  • 398tagAlign
  • 114bed broadPeak
  • 79bigBed broadPeak
  • bed bed3+
  • 3tar
  • 1tagAlign bed3+
Organism
  • 1811Homo sapiens
Biosample type
  • 879tissue
  • 484cell line
  • 276primary cell
  • 179in vitro differentiated cells
Organ
  • 546liver
  • 218brain
  • 197pancreas
  • 142connective tissue
  • 134heart
  • 126epithelium
  • 102vasculature
  • 99blood vessel
  • 69adipose tissue
  • 66limb
  • 60blood
  • 60bodily fluid
  • 52kidney
  • 39musculature of body
  • 35nerve
  • 34artery
  • 20spleen
  • 19embryo
  • 17vein
  • 5eye
  • 4gonad
  • 4ovary
  • 1lymph node
  • 1pituitary gland
Project
  • 1730AMP
  • 88T1D
Genome assembly (visualization)
  • 1252hg19
  • 1213GRCh38
Lab
  • 1606AMP-T2D consortium
  • 154Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 18Bing Ren, UCSD
Audit category:
  • 59inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 75missing controlled_by
Audit category:
  • 46inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.file_type!
  • bed bed3+
BIOSAMPLE
ASSAY

1818 results

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Clear Filters
ChIP-seq
tissue
liver142
islet of Langerhans50
left cardiac atrium40
subcutaneous abdominal adipose tissue36
body of pancreas35
cell line
HepG2378
GM1287860
EndoC_BH115
Panc113
smooth muscle cell of the coronary artery6
primary cell
monocyte85
CD8-positive, alpha-beta T cell33
pancreatic endocrine cell23
endothelial cell of umbilical vein17
skeletal muscle myoblast15
in vitro differentiated cells
adipocyte60
embryonic stem cell40
neural progenitor cell21
hepatocyte15
pancreatic endoderm15
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