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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
Assay category
218
DNA binding
36
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
84
October, 2019
28
May, 2019
15
October, 2017
Available data
196
bam
172
bigWig
170
bed narrowPeak
118
tagAlign
94
bigBed narrowPeak
18
fastq
15
bed broadPeak
6
bigBed broadPeak
1
tagAlign bed3+
Organism
218
Homo sapiens
Biosample type
209
tissue
9
primary cell
Organ
529
liver
218
brain
218
pancreas
151
connective tissue
134
heart
128
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
52
kidney
blood
50
bodily fluid
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
218
AMP
Genome assembly (visualization)
171
GRCh38
123
hg19
Lab
218
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
bed bed3
organ_slims!
blood
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
218 results
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ChIP-seq
tissue
layer of hippocampus
23
brain
20
substantia nigra
16
angular gyrus
15
caudate nucleus
15
+ See 63 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
See all biosamples
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