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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
138
ChIP-seq
Assay category
481
Transcription
138
DNA binding
21
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Target of assay
69
histone
69
histone modification
40
broad histone mark
35
control
34
transcription factor
28
narrow histone mark
4
RNA binding protein
2
chromatin remodeller
Date released
116
August, 2017
18
October, 2018
3
June, 2019
1
October, 2019
Available data
102
bam
90
fastq
75
bigWig
58
bed narrowPeak
22
tagAlign
bigBed narrowPeak
11
bed bed3+
1
bed broadPeak
Organism
138
Homo sapiens
Biosample type
68
tissue
67
in vitro differentiated cells
3
primary cell
Organ
200
liver
159
pancreas
138
connective tissue
124
brain
93
epithelium
70
heart
67
adipose tissue
31
vasculature
30
blood vessel
28
kidney
25
musculature of body
22
embryo
18
limb
13
artery
11
nerve
8
spleen
7
vein
6
blood
6
bodily fluid
4
gonad
4
ovary
3
eye
1
lymph node
1
pituitary gland
Project
138
AMP
Genome assembly (visualization)
61
hg19
60
GRCh38
Lab
138
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
bigBed narrowPeak
tar
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
138 results
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Clear Filters
ChIP-seq
tissue
subcutaneous abdominal adipose tissue
36
white adipose tissue
12
subcutaneous adipose tissue
10
omental fat pad
8
adipose tissue
1
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in vitro differentiated cells
adipocyte
67
primary cell
cardiac fibroblast
2
mesenchymal stem cell
1
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