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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
Assay category
122
DNA accessibility
73
Transcription
57
DNA binding
49
DNA methylation
1
3D chromatin structure
Target of assay
48
control
9
histone
9
histone modification
5
broad histone mark
4
narrow histone mark
Date released
29
August, 2017
11
October, 2018
7
October, 2019
6
September, 2017
2
November, 2019
1
May, 2019
1
May, 2021
Available data
198
bam
bigWig
147
fastq
140
bed narrowPeak
59
bigBed narrowPeak
21
bed bed3+
19
tagAlign
12
bed broadPeak
Organism
56
Homo sapiens
Biosample type
35
tissue
12
primary cell
9
cell line
1
in vitro differentiated cells
Organ
120
liver
78
connective tissue
57
pancreas
54
adipose tissue
46
brain
28
epithelium
23
blood vessel
23
vasculature
20
heart
18
limb
13
kidney
12
musculature of body
11
nerve
9
artery
8
embryo
8
spleen
6
blood
6
bodily fluid
5
vein
4
gonad
4
ovary
3
eye
1
lymph node
Project
57
AMP
Genome assembly (visualization)
2
GRCh38
2
hg19
Lab
57
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
bigWig
hic
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
57 results
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Clear Filters
ChIP-seq
tissue
islet of Langerhans
21
body of pancreas
9
pancreas
3
endocrine pancreas
2
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
cell line
Panc1
7
EndoC_BH1
2
in vitro differentiated cells
pancreatic PP cell
1
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