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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
565
ChIP-seq
Assay category
565
DNA binding
189
Transcription
32
DNA accessibility
7
DNA methylation
2
3D chromatin structure
Target of assay
327
transcription factor
121
histone modification
120
histone
114
control
82
recombinant protein
64
narrow histone mark
57
RNA binding protein
56
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
50
May, 2020
49
November, 2018
48
August, 2017
40
October, 2019
August, 2021
Available data
541
bam
452
fastq
439
bigWig
420
bed narrowPeak
376
bigBed narrowPeak
82
tagAlign
58
bed broadPeak
58
bigBed broadPeak
3
bed bed3+
3
tar
Organism
565
Homo sapiens
Biosample type
360
cell line
190
tissue
15
in vitro differentiated cells
Organ
530
liver
218
brain
218
pancreas
153
connective tissue
134
heart
125
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
565
AMP
Genome assembly (visualization)
436
hg19
381
GRCh38
Lab
565
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
hic
month_released!
August, 2021
BIOSAMPLE
ASSAY
565 results
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Clear Filters
ChIP-seq
cell line
HepG2
360
tissue
liver
145
tibial nerve
35
right lobe of liver
10
in vitro differentiated cells
hepatocyte
15
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