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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
Assay category
175
Transcription
123
DNA accessibility
79
DNA binding
47
DNA methylation
8
3D chromatin structure
Target of assay
89
histone
89
histone modification
46
narrow histone mark
broad histone mark
25
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
20
August, 2017
12
December, 2017
12
October, 2019
11
September, 2018
7
November, 2019
6
June, 2019
6
November, 2017
3
May, 2019
1
March, 2020
1
May, 2021
Available data
85
bam
59
bigWig
57
bed narrowPeak
49
fastq
22
bigBed narrowPeak
tagAlign
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
Organism
79
Homo sapiens
Biosample type
58
primary cell
12
in vitro differentiated cells
9
cell line
Organ
442
liver
129
pancreas
99
connective tissue
79
epithelium
75
brain
71
heart
60
blood
60
bodily fluid
51
vasculature
49
adipose tissue
48
blood vessel
37
kidney
32
limb
19
nerve
18
embryo
16
spleen
14
artery
12
musculature of body
8
vein
5
eye
4
gonad
4
ovary
1
lymph node
Project
77
AMP
2
T1D
Genome assembly (visualization)
55
hg19
53
GRCh38
Lab
79
AMP-T2D consortium
Audit category:
19
inconsistent ontology term
Audit category:
11
missing controlled_by
Audit category:
5
inconsistent control read length
files.file_type!
tagAlign
month_released!
February, 2021
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
79 results
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Clear Filters
ChIP-seq
primary cell
pancreatic alpha cell
10
pancreatic beta cell
10
endothelial cell of umbilical vein
8
epithelial cell of proximal tubule
7
pancreatic ductal cell
7
+ See 5 more…
in vitro differentiated cells
hepatocyte
8
Hepatic endoderm
4
cell line
EndoC_BH1
9
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