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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 53ChIP-seq
Assay category
  • 209DNA accessibility
  • 53DNA binding
  • 53D chromatin structure
  • 2Transcription
Target of assay
  • 25histone
  • 25histone modification
  • 19transcription factor
  • 13narrow histone mark
  • 12broad histone mark
  • 9control
  • 2RNA binding protein
Date released
  • 33August, 2017
  • 15December, 2017
  • 3August, 2021
  • 2September, 2017
Available data
  • 1578bam
  • 1390bigWig
  • 1325bed narrowPeak
  • 857fastq
  • 801bigBed narrowPeak
  • 398tagAlign
  • 114bed broadPeak
  • 79bigBed broadPeak
  • 53bed bed3+
  • 3tar
  • 1tagAlign bed3+
Organism
  • 53Homo sapiens
Biosample type
  • 28tissue
  • 19in vitro differentiated cells
  • 3primary cell
  • 3stem cell
Organ
  • 21pancreas
  • 11connective tissue
  • 6liver
  • 4adipose tissue
  • 3embryo
  • 3epithelium
Project
  • 53AMP
Genome assembly (visualization)
  • 53GRCh38
  • 53hg19
Lab
  • 53AMP-T2D consortium
Audit category:
  • 14missing controlled_by
Audit category:
  • 10inconsistent control read length
BIOSAMPLE
ASSAY

53 results

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Clear Filters
ChIP-seq
tissue
islet of Langerhans21
white adipose tissue4
liver3
in vitro differentiated cells
adipocyte7
Posterior foregut3
definitive endodermal cell3
pancreatic endoderm3
primitive gut cell3
primary cell
hepatocyte3
stem cell
hESC3
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