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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
Assay category
1386
Transcription
71
DNA accessibility
64
DNA binding
17
DNA methylation
4
3D chromatin structure
Target of assay
27
transcription factor
20
control
17
histone
17
histone modification
11
narrow histone mark
6
broad histone mark
1
RNA binding protein
Date released
39
August, 2017
22
November, 2017
3
May, 2021
October, 2019
Available data
1359
bam
1214
bigWig
bed narrowPeak
857
fastq
743
bigBed narrowPeak
349
tagAlign
112
bed broadPeak
77
bigBed broadPeak
53
bed bed3+
3
tar
Organism
64
Homo sapiens
Biosample type
21
tissue
19
cell line
19
primary cell
5
in vitro differentiated cells
Organ
21
pancreas
19
liver
17
connective tissue
12
adipose tissue
3
brain
2
epithelium
2
vasculature
1
blood vessel
Project
64
AMP
Genome assembly (visualization)
64
hg19
38
GRCh38
Lab
61
AMP-T2D consortium
3
Kyle Gaulton, UCSD
Audit category:
38
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bed narrowPeak
bedpe bed3+
month_released!
October, 2019
BIOSAMPLE
ASSAY
64 results
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ChIP-seq
tissue
white adipose tissue
12
islet of Langerhans
9
cell line
HepG2
19
primary cell
pancreatic endocrine cell
12
CD8-positive, alpha-beta T cell
3
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
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in vitro differentiated cells
adipocyte
5
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