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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
Assay category
474
Transcription
75
DNA binding
18
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
40
transcription factor
35
histone
35
histone modification
18
narrow histone mark
16
broad histone mark
10
RNA binding protein
2
chromatin remodeller
Date released
61
August, 2017
9
June, 2019
5
October, 2018
Available data
102
bam
90
fastq
75
bigWig
58
bed narrowPeak
22
tagAlign
15
bigBed narrowPeak
11
bed bed3+
1
bed broadPeak
Organism
75
Homo sapiens
Biosample type
47
in vitro differentiated cells
19
tissue
9
primary cell
Organ
432
liver
172
brain
129
pancreas
114
heart
80
epithelium
79
vasculature
76
blood vessel
75
connective tissue
54
blood
54
bodily fluid
48
limb
39
kidney
27
musculature of body
25
artery
24
nerve
19
adipose tissue
14
embryo
12
spleen
12
vein
2
eye
1
pituitary gland
Project
75
AMP
Genome assembly (visualization)
75
hg19
74
GRCh38
Lab
75
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
month_released!
September, 2018
BIOSAMPLE
ASSAY
75 results
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ChIP-seq
in vitro differentiated cells
adipocyte
47
tissue
white adipose tissue
12
omental fat pad
3
subcutaneous adipose tissue
2
adipose tissue
1
subcutaneous abdominal adipose tissue
1
primary cell
mesenchymal stem cell
6
cardiac fibroblast
3
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