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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1495ChIP-seq
Assay category
  • 1755Transcription
  • 1495DNA binding
  • 810DNA accessibility
  • 97DNA methylation
  • 333D chromatin structure
  • 1DNA sequencing
Target of assay
  • 948histone modification
  • 947histone
  • 483narrow histone mark
  • 463broad histone mark
  • 285transcription factor
  • 259control
  • 88RNA binding protein
  • 27chromatin remodeller
  • 7recombinant protein
  • 2other context
  • 2other post-translational modification
Date released
  • 242October, 2019
  • 237August, 2017
  • 233November, 2017
  • 165May, 2021
  • 120May, 2019
  • 80April, 2019
  • 59December, 2017
  • 59October, 2018
  • 50May, 2020
  • 43August, 2021
  • 40May, 2024
  • 31December, 2018
  • 31June, 2019
  • 24February, 2018
  • 22November, 2018
  • 18January, 2019
  • 13November, 2019
  • 11October, 2017
  • 8February, 2021
  • 6September, 2017
  • 3March, 2020
Available data
  • 1202bam
  • 1093bigWig
  • 1063bed narrowPeak
  • 575bigBed narrowPeak
  • 481fastq
  • 387tagAlign
  • 102bed broadPeak
  • 73bigBed broadPeak
  • 41bed bed3+
  • 3tar
  • 1tagAlign bed3+
Organism
  • 1494Homo sapiens
Biosample type
  • 799tissue
  • 263cell line
  • 234primary cell
  • 196in vitro differentiated cells
  • 3stem cell
Organ
  • 297liver
  • 214brain
  • 153pancreas
  • 134heart
  • 124connective tissue
  • 108epithelium
  • 102vasculature
  • 99blood vessel
  • 66limb
  • 52kidney
  • 46adipose tissue
  • 44blood
  • 44bodily fluid
  • 39musculature of body
  • 35nerve
  • 34artery
  • 22embryo
  • 17vein
  • 14spleen
  • 5eye
  • 4gonad
  • 4ovary
  • 1lymph node
  • 1pituitary gland
Project
  • 1407AMP
  • 88T1D
Genome assembly (visualization)
  • 1010hg19
  • 973GRCh38
Lab
  • 1283AMP-T2D consortium
  • 154Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 18Bing Ren, UCSD
Audit category:
  • 59inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 26missing controlled_by
Audit category:
  • 45inconsistent control read length
  • 8inconsistent control run_type
  • 1inconsistent assembly
files.platform.term_name!
  • Illumina HiSeq 2000
BIOSAMPLE
ASSAY

1495 results

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Clear Filters
ChIP-seq
tissue
liver95
islet of Langerhans65
left cardiac atrium40
subcutaneous abdominal adipose tissue36
heart left ventricle35
cell line
HepG2173
GM1287844
EndoC_BH115
Panc113
smooth muscle cell of the coronary artery6
primary cell
monocyte85
CD8-positive, alpha-beta T cell33
endothelial cell of umbilical vein17
skeletal muscle myoblast14
pancreatic alpha cell13
in vitro differentiated cells
adipocyte65
embryonic stem cell40
neural progenitor cell21
pancreatic endoderm18
hepatocyte15
stem cell
hESC3
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