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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
376
ChIP-seq
Assay category
376
DNA binding
163
Transcription
22
DNA accessibility
1
3D chromatin structure
Target of assay
229
transcription factor
82
recombinant protein
76
control
69
histone
69
histone modification
38
broad histone mark
31
narrow histone mark
26
RNA binding protein
9
chromatin remodeller
3
other context
3
other post-translational modification
Date released
173
November, 2017
59
August, 2017
48
November, 2018
35
December, 2017
32
September, 2018
15
October, 2018
7
January, 2019
4
October, 2017
3
December, 2018
Available data
376
bam
376
fastq
297
bigWig
262
bed narrowPeak
226
bigBed narrowPeak
12
bed bed3+
12
bed broadPeak
11
tagAlign
6
bigBed broadPeak
Organism
370
Homo sapiens
Biosample type
221
cell line
108
tissue
45
primary cell
2
in vitro differentiated cells
Organ
255
liver
65
pancreas
29
connective tissue
27
adipose tissue
21
epithelium
16
blood
16
bodily fluid
6
spleen
4
brain
Project
376
AMP
Genome assembly (visualization)
295
hg19
293
GRCh38
Lab
376
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
63
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
376 results
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ChIP-seq
cell line
HepG2
205
GM12878
16
tissue
liver
50
pancreas
13
white adipose tissue
12
subcutaneous adipose tissue
9
islet of Langerhans
6
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primary cell
pancreatic endocrine cell
23
pancreatic ductal cell
13
pancreatic acinar cell
8
skeletal muscle myoblast
1
in vitro differentiated cells
adipocyte
2
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