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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1708ChIP-seq
Assay category
  • 1708DNA binding
  • 1703Transcription
  • 675DNA accessibility
  • 45DNA methylation
  • 333D chromatin structure
  • 1DNA sequencing
Target of assay
  • 1007histone
  • 1007histone modification
  • 508narrow histone mark
  • 498broad histone mark
  • 405transcription factor
  • 294control
  • 93RNA binding protein
  • 89recombinant protein
  • 25chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 362November, 2017
  • 282August, 2017
  • 242October, 2019
  • 165May, 2021
  • 120May, 2019
  • 90December, 2017
  • 80April, 2019
  • 50May, 2020
  • 44November, 2018
  • 43August, 2021
  • 40May, 2024
  • 39October, 2018
  • 32September, 2018
  • 31June, 2019
  • 24February, 2018
  • 17January, 2019
  • 15October, 2017
  • 13November, 2019
  • 8February, 2021
  • 6September, 2017
  • 3March, 2020
  • 2December, 2018
Available data
  • 1415bam
  • 1268bigWig
  • 1203bed narrowPeak
  • 694fastq
  • 688bigBed narrowPeak
  • 398tagAlign
  • 114bed broadPeak
  • 79bigBed broadPeak
  • 53bed bed3+
  • 3tar
  • 1tagAlign bed3+
Organism
  • 1701Homo sapiens
Biosample type
  • 842tissue
  • 387cell line
  • 278primary cell
  • 198in vitro differentiated cells
  • 3stem cell
Organ
  • 483liver
  • 218brain
  • 205pancreas
  • 134heart
  • 131connective tissue
  • 129epithelium
  • 102vasculature
  • 99blood vessel
  • 66limb
  • 52kidney
  • 51adipose tissue
  • 39musculature of body
  • 35nerve
  • 34artery
  • 22embryo
  • 17vein
  • 15blood
  • 15bodily fluid
  • 7spleen
  • 5eye
  • 4gonad
  • 4ovary
  • 1lymph node
  • 1pituitary gland
Project
  • 1620AMP
  • 88T1D
Genome assembly (visualization)
  • 1183hg19
  • 1146GRCh38
Lab
  • 1496AMP-T2D consortium
  • 154Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 18Bing Ren, UCSD
Audit category:
  • 59inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 82missing controlled_by
Audit category:
  • 48inconsistent control read length
  • 2inconsistent assembly
files.run_type!
  • paired-ended
BIOSAMPLE
ASSAY

1708 results

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Clear Filters
ChIP-seq
tissue
liver132
islet of Langerhans71
left cardiac atrium40
subcutaneous abdominal adipose tissue36
heart left ventricle35
cell line
HepG2326
EndoC_BH115
GM1287815
Panc113
smooth muscle cell of the coronary artery6
primary cell
monocyte85
CD8-positive, alpha-beta T cell33
pancreatic endocrine cell23
endothelial cell of umbilical vein17
skeletal muscle myoblast14
in vitro differentiated cells
adipocyte67
embryonic stem cell40
neural progenitor cell21
pancreatic endoderm18
hepatocyte15
stem cell
hESC3
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