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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1175ChIP-seq
Assay category
  • 1709Transcription
  • 1175DNA binding
  • 826DNA accessibility
  • 87DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 795histone modification
  • 794histone
  • 408narrow histone mark
  • 386broad histone mark
  • 208control
  • 169transcription factor
  • 46RNA binding protein
  • 11chromatin remodeller
  • 7recombinant protein
  • 3other context
  • 3other post-translational modification
Date released
  • 242October, 2019
  • 165May, 2021
  • 128August, 2017
  • 125November, 2017
  • 120May, 2019
  • 80April, 2019
  • 51October, 2018
  • 50May, 2020
  • 43August, 2021
  • 40May, 2024
  • 32December, 2018
  • 31June, 2019
  • 26November, 2018
  • 13November, 2019
  • 8February, 2021
  • 8January, 2019
  • 6October, 2017
  • 4December, 2017
  • 3March, 2020
Available data
  • 884bam
  • 811bigWig
  • 807bed narrowPeak
  • 424bigBed narrowPeak
  • 359tagAlign
  • 161fastq
  • 28bed broadPeak
  • 3bed bed3+
  • 2bigBed broadPeak
  • 1tagAlign bed3+
Organism
  • 1175Homo sapiens
Biosample type
  • 752tissue
  • 185primary cell
  • 160cell line
  • 78in vitro differentiated cells
Organ
  • 200brain
  • 168liver
  • 134heart
  • 96blood vessel
  • 96vasculature
  • 85connective tissue
  • 84pancreas
  • 66limb
  • 58adipose tissue
  • 57epithelium
  • 52kidney
  • 45blood
  • 45bodily fluid
  • 39musculature of body
  • 35nerve
  • 34artery
  • 17vein
  • 13spleen
  • 5eye
  • 4gonad
  • 4ovary
  • 1lymph node
  • 1pituitary gland
Project
  • 1087AMP
  • 88T1D
Genome assembly (visualization)
  • 732GRCh38
  • 721hg19
Lab
  • 963AMP-T2D consortium
  • 154Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 18Bing Ren, UCSD
Audit category:
  • 55inconsistent ontology term
Audit category:
  • 6missing controlled_by
Audit category:
  • 8inconsistent control run_type
  • 7inconsistent control read length
files.run_type!
  • single-ended
BIOSAMPLE
ASSAY

1175 results

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Clear Filters
ChIP-seq
tissue
liver91
islet of Langerhans43
left cardiac atrium40
subcutaneous abdominal adipose tissue36
heart left ventricle35
primary cell
monocyte85
CD8-positive, alpha-beta T cell33
endothelial cell of umbilical vein17
epithelial cell of proximal tubule10
skeletal muscle satellite cell8
cell line
HepG269
GM1287845
EndoC_BH115
Panc113
smooth muscle cell of the coronary artery6
in vitro differentiated cells
embryonic stem cell37
neural progenitor cell21
adipocyte14
cardiomyocytes3
pancreatic PP cell3
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