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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 696ChIP-seq
Assay category
  • 696DNA binding
  • 209Transcription
  • 10DNA methylation
  • 6DNA accessibility
Target of assay
  • 345transcription factor
  • 222histone
  • 222histone modification
  • 127control
  • 115broad histone mark
  • 106narrow histone mark
  • 82recombinant protein
  • 68RNA binding protein
  • 25chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 281November, 2017
  • 168August, 2017
  • 90December, 2017
  • 44November, 2018
  • 32September, 2018
  • 24February, 2018
  • 23October, 2018
  • 17January, 2019
  • 9October, 2017
  • 6September, 2017
  • 2December, 2018
Available data
  • 696fastq
  • 694bam
  • 579bigWig
  • 518bed narrowPeak
  • 377bigBed narrowPeak
  • 86bed broadPeak
  • 77bigBed broadPeak
  • 50bed bed3+
  • 39tagAlign
  • 3tar
Organism
  • 689Homo sapiens
Biosample type
  • 324cell line
  • 155tissue
  • 120in vitro differentiated cells
  • 94primary cell
  • 3stem cell
Organ
  • 384liver
  • 134pancreas
  • 72epithelium
  • 68connective tissue
  • 22embryo
  • 18brain
  • 15adipose tissue
  • 15blood
  • 15bodily fluid
  • 7spleen
  • 6vasculature
  • 3blood vessel
Project
  • 696AMP
Genome assembly (visualization)
  • 584hg19
  • 534GRCh38
Lab
  • 696AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 4inconsistent ontology term
Audit category:
  • 83missing controlled_by
Audit category:
  • 49inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

696 results

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Clear Filters
ChIP-seq
cell line
HepG2309
GM1287815
tissue
liver54
islet of Langerhans28
body of pancreas20
pancreas16
white adipose tissue12
in vitro differentiated cells
adipocyte53
pancreatic endoderm18
hepatocyte15
definitive endodermal cell8
primitive gut cell8
primary cell
pancreatic endocrine cell23
skeletal muscle myoblast15
pancreatic alpha cell13
pancreatic beta cell13
pancreatic ductal cell13
stem cell
hESC3
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